## PRSweb reference PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608 ## PRSweb LD reference MGI ## PRSweb date 20200608 ## GWAS source 26829030;26908436;27424798 ## GWAS reference GWAS Catalog r2019-05-03 ## GWAS phenotype Squamous cell carcinoma;Cutaneous squamous cell carcinoma ## GWAS id GWAS_Catalog_r2019-05-03_X172.22 ## GWAS URL https://www.ebi.ac.uk/gwas ## PRS method LD Clumping (MAF >= 1%, r^2 <= 0.1) & P-value thresholding (see tuning parameter) ## PRS tuning parameter 1e-07 ## PRS evaluation in UKB ## Genome build GRCh37/hg19 CHROM POS REF ALT EA OA PVALUE WEIGHT 3 71483084 G A A G 1e-08 0.104360015324243 3 188088118 C G G C 1e-07 0.0953101798043249 3 189205032 T A T A 1e-11 0.122217632724249 5 33946571 A G G A 1e-13 0.527632769082371 6 396321 C T T C 3e-111 0.482426149244293 6 32608858 C T T C 2e-18 0.157003748809665 7 17134708 G A A G 4e-08 0.392042087776024 9 16884586 T A A T 1e-08 0.105360595657823 9 139356987 T C C T 8e-09 0.113328685307003 11 89017961 G A A G 3e-14 0.148420005118273 11 115890279 T C C T 9e-09 0.756121979721334 15 28230318 C T T C 9e-09 0.182321556793955 16 90026512 T C C T 2e-44 0.285178942233662 20 32665748 A G A G 3e-14 0.2390169004705